Standard Service Offerings

The Molecular and Genomics Informatics Core offers a variety of standard services. Each of these standard services has a defined start and end point. As certain custom requests are developed they may be offered as standard services.

All services include any intermediary data files available upon request, as well as publication data deposition support (GEO/SRA).

Whole Genome Sequencing Analysis Services

Variant Analysis

Variant Analysis

To identify genomics variants (SNP/Indels) comparatively. Usually involves comparing to reference, but can also be used for cross-sample comparisons.

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De Novo Assembly

De Novo Assembly

When you dont have a reference genome and you need to build one, we can perform de novo assembly. This can be an iterative process requiring multiple data types to achieve completion.

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RNA Sequencing Analysis Services

Differential Gene Expression

Differential Gene Expression

To identify the differentially expressed genes across different conditions.

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Pathway Analysis

Pathway Analysis

Beyond just the differential gene expression, we can explore the pathways or gene ontologies that are available to garner a more wholistic view of what is perturbed in your conditions.

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Single Cell RNA-seq

Single Cell RNA-seq

Single cell RNA-seq analysis for 10X Genomics based samples

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Epigenetics Sequencing Analysis Services

Differential Peak Expression

Differential Peak Expression

To identify the differentially expressed peaks across different conditions. Usually for ChIP-seq or ATAC-seq

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Amplicon Sequencing Services

Amplicon Analysis

Standard Amplicon Analysis

To count the number of amplicons across samples.

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16s Metagenomics

16s Metagenomics

Exploring the microbial diversity of environmental or organismal samples.

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VDJ

VDJ Diversity

Diversity analysis of TCR or BCR repetoire expression.

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Custom Service Offerings

MaGIC can additionally offer custom services on a case-by-case basis. This entails going beyond the standard offerings and will be proactively discussed with investigators to determine timeline and budget for each project. Some examples are:

  • Additional custom plotting beyond standard offering
  • Personal pipeline development
  • Web page development
  • Protein analysis services